ITLACMDScientific Applications Visualization Group
SAVG Publications
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Up Visualization Parallel Computing Data Mining Released Software

Here is a list of reports and papers written or co-authored by staff of the NIST High Performance Computing and Visualization Group. Note: Printed copies of these publications may be requested from Yolanda M. Parker .


2010

(bullet) Edward Garboczi , Jeffrey Bullard, Nicos Martys and Judith Terrill, The Virtual Cement and Concrete Testing Laboratory: Performance Prediction, Sustainability, and the CSHub in NRMCA Concrete Sustainability Conference , Tempe, AZ, April 13-July 15, 2010.
(bullet) Jeffrey Bullard, Edith Enjolras, William George , S. Satterfield and Judith Terrill, A parallel reaction-transport model applied to cement hydration and microstructure development, Modelling and Simulation in Materials Science and Engineering, 18, 2010. ID: 025007.
Note: Modelling Simul. Mater. Sci. Eng. 18 (2010) 025007 (16pp) doi:10.1088/0965-0393/18/2/025007
(bullet) G. Bryant, M. Zielinski, N. Malkova, J. Sims, W. Jaskolski and J. Aizpurua, Effect of Mechanical Strain on the Optical Properties of Quantum Dots: Controlling Exciton Shape, Orientation, and Phase with a Mechanical Strain, Physical Review Letters, 105 (6) , 2010. ID: 067404.
Note: Pages 067404-1 to 067404-1=4 DOI: 10.1103/PhysRevLett.105.067404
(bullet) Dilip Bannergee, John Gross, Pradeep Reddy Gaddam, Marc Olano, William Hess, Judith Terrill, Terence Griffin, John Hagedorn , John Kelso and Steve Satterfield , An Integrated Interactive Visualization and Analysis Environment to study the Impact of Fire on Building Structures in SIGGRAPH 2010 , Los Angeles, CA, July 25-29, 2010.
(bullet) J. Chalfoun, Alden Dima , Adele Peskin , John Elliot and J. Filliben, A Human Inspired Local Ratio-Based Algorithm for Edge Detection in Fluorescent Cell Images in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November 22-December 1, 2010.
(bullet) Adele Peskin , Alden Dima , J. Chalfoun and John Elliot, Predicting Segmentation Accuracy for Biological Cell Images in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November 22-December 1, 2010.
(bullet) Adele Peskin and Alden Dima , Modeling Clinical Tumors to Create Reference Data for Tumor Volume Measurement in The 6th International Symposium on Visual Computing 2010, Las Vegas, NV., November 22-December 1, 2010.
(bullet) Adele Peskin , Alden Dima , J. Chalfoun and James J. Filliben, Accuracy in Fluorescent Cell Image Segmentation Algorithms in IBIS-2010 The International Symposium on Business and Industrial Statistics, Portoroz, Slovenia, July 5-9, 2010.
(bullet) Adele Peskin , Alden Dima , J. Chalfoun and John Elliot, Predicting Segmentation Accuracy for Biological Cell Images in Bioimage Informatics 2010, Pittsburg, PA, September 17-19, 2010.

2009

(bullet) K. Sayrafian-Pour, W. Yang, J. Hagedorn, J. Terrill and K. Y. Yazdandoost, A Statistical Path Loss Model for Medical Implant Communication Channels in IEEE 2009 Personal, Indoor, and Mobile Radio Communications Symposium , September 2009.
Note: Received Best Paper Award.
(bullet) Adele Peskin , Karen Kafadar, A. M. Santos and Gillian Haemer, Robust Volume Calculations of Tumors of Various Sizes in The 2009 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, NV., July 13-16, 2009.
(bullet) Adele Peskin , Karen Kafadar, Alden Dima , Javier Bernal and David Gilsinn, Synthetic Lung Tumor Data Sets for Comparison of Volumetric Algorithms in The 2009 International Conference on Image Processing, Computer Vision, and Pattern Recognition, Las Vegas, NV., July 13-16, 2009.
(bullet) Adele Peskin , Karen Kafadar and Alden Dima , A Quality Pre-Processor for Biological Cell Images in "Computational Bioimaging 2009, 5th International Symposium on Visual Computing, Las Vegas, NV., November 30-December 2, 2009.
(bullet) G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the optics of quantum dots with mechanical strain in Optics of Excitons in Confined Systems (OECS11), Madrid, Spain, September 7-11, 2009.
(bullet) G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the optics of quantum dots with mechanical strain in Electronic Materials Conference, University Park, PA, June 24-26, 2009.
(bullet) Dilip Bannergee, John Gross, William Hess, Marc Olano and Judith Terrill, Visualization of Structural Behavior under Fire, August 2009. Available as NISTIR 7619.
(bullet) Judith Terrill, W. L. George , Terrence J. Griffin , John Hagedorn, John T. Kelso, Marc Olano, Adele Peskin , S. Satterfield, James S. Sims, J. W. Bullard, Joy Dunkers, N. S. Martys , Agnes O'Gallagher and Gillian Haemer, Extending Measurement Science to Interactive Visualization Environments in Trends in Interactive Visualization: A-State-of-the-Art Survey, Elena Zudilova-Seinstra, Tony Adriaansen and Robert Van Liere (Ed.) , Springer, U.K., 2009.
Note: Pages: 207-302
(bullet) K. Y. Yazdandoost and K. Sayrafian-Pour, Channel Model for Body Area Network (BAN) , April 2009, Report to the IEEE P802.15. ID: IEEE 802.15-08-0780-02-0006.
Note: J. Hagedorn, J. Terrill, and W. Yang listed as contributors.
(bullet) Nicos Martys, Didier Lootens, W. L. George and Pascal Hebraud , Contact and stress anisotropies in start-up flow of colloidal suspensions, Physical Review E, 80, 2009. ID: 031401.
Note: Comment: Phys. Rev. E80, 031401, 7 pages, (2009)
(bullet) James S. Sims and Stanley A. Hagstrom, Hy-CI Study of the 22S Ground State of Neutral Lithium and the First Five Excited 2S States, Physical Review A, 80, 2009. ID: 052507.
Note: DOI: 10.1103/PhysRevA.80.052507
(bullet) Zachary Levine, M. Li, A. P. Reeves, D. F. Yankelvitz , J. J. Chen , E. L. siegel , Adele Peskin and D. N. Zeiger , A Low-Cost Density Reference Phantom for Computed Tomography, Medical Physics, 36, 2009, pp. 286-288.

2008

(bullet) J. Hagedorn, J. Terrill, W. Yang, K. Sayrafian-Pour, K. Y. Yazdandoost and R. Kohno, A Statistical Path Loss Model for MICS , September 2008, Report to the IEEE P802.15. ID: IEEE 802.15-08-0519-01-0006.
(bullet) N. S. Martys , D. Lootens, W. L. George , S. Satterfield and P.Hebraud , Spatial-Temporal Correlations in concentrated suspensions in 15th International Congress on Rheology, Monterey CA., August 3-8, 2008.
(bullet) N. S. Martys , D. Lootens, W. L. George , S. Satterfield and P.Hebraud , Stress chains formation under shear of concentrated suspension in 15th International Congress on Rheology, Monterey CA., August 3, 2009-August 8, 2008.
(bullet) John G. Hagedorn, Judith E. Terrill, Adele P. Peskin and James J. Filliben, Methods for Quantifying and Characterizing Errors in Pixel-Based 3D Rendering, NIST Journal of Research, 113 (4) , July-August, 2008, pp. 221-238.
Links:  pdf and pdf.
(bullet) J. Hagedorn, J. Terrill, W. Yang, K. Sayrafian-Pour, K. Y. Yazdandoost and R. Kohno, MICS Channel Characteristic: Preliminary Results , May 2008, Report to the IEEE P802.15. ID: IEEE 802.15-08-0351-00-0006.
(bullet) James S. Sims, W. L. George , Terrence J. Griffin , John G. Hagedorn, Howard K. Hung, John T. Kelso, Marc Olano, Adele P. Peskin, Steven G. Satterfield, Judith E. Terrill, Garnett W. Bryant and Jose G. Diaz, Accelerating Scientific Discovery Through Computation and Visualization III. Tight-Binding Wave Functions for Quantum Dots, NIST Journal of Research, 113 (3) , May-June, 2008, pp. 131-142.
Links:  pdf and pdf.

2007

(bullet) J. Hagedorn, J. Dunkers, S. Satterfield, A. Peskin, J. Kelso and J. Terrill, Measurement Tools for the Immersive Visualization Environment: Steps Toward the Virtual Laboratory, NIST Journal of Research, 112 (5) , September-October, 2007, pp. 257-270.
Links:  htm and pdf.
(bullet) James S. Sims and Stanley A. Hagstrom, Math and computational science issues in high-precision Hy-CI calculations II. Kinetic Energy and electron-nucleus interaction integrals, Journal of Physics B: Atomic, Molecular, and Optical Physics, 40, 2007, pp. 1575-1587.
(bullet) Z. H. Levine, A. Volkovitsky and H. K. Hung, Alignment of Fiducial Marks in a Tomographic Tilt Series with an Unknown Rotation Axis, Computer Physics Communications, 176, April 2007, pp. 694-700.
(bullet) N. S. Martys , C. F. Ferraris , V. Gupta , J.H. Cheung , J. G. Hagedorn , A. P. Peskin and E. J. Garboczi , Computational Model Predictions of Suspension Rheology: Comparison to Experiment in 12th International Conference on the Chemistry of Cement, Montreal, Canada, July 8-13, 2007.
(bullet) John G. Hagedorn, Steven G. Satterfield, John T. Kelso, Whitney Austin, Adele P. Peskin and Judith E. Terrill, Correction of Location and Orientation Errors in Electromagnetic Motion Tracking, Presence, 16 (4) , August 2007, pp. 352-366.
Links:  pdf and postscript.
(bullet) G. Bryant, M. Zielinski, W. Jaskolski, J. Aizpurua and J. Sims, Controlling the Optical Properties of Self-Assembled Quantum Dots Using External Strain delivered at Materials Research Society Fall Meeting, Boston, MA, November 26, 2007.

2006

(bullet) J. Hagedorn, J. Dunkers, A. Peskin, J. Kelso and J. Terrill, Quantitative, Interactive Measurement of Tissue Engineering Scaffold Structure in an Immersive Visualization Environment, Biomaterials Forum, 28, 2006, pp. 6-9.
(bullet) J. Hagedorn, J. Dunkers, A. Peskin, J. Kelso and J. Terrill, Quantitative, Interactive Measurement of Tissue Engineering Scaffold Structure in an Immersive Visualization Environemnt, cover of Biomaterials Forum, 28, 2006.
(bullet) Howard Hung, Visualization of a quantum dot, National Geographic Online Edition, June 2006.
(bullet) J. Sims, G. Bryant and H. Hung, Excitons in Negative Band Gap Nanocrystals delivered at American Physics Society March Meeting, Baltimore, MD, March 14, 2006.
(bullet) James S. Sims and Stanley A. Hagstrom, James S. Sims and Stanley A. Hagstrom, High Precision Variational Born-Oppenheimer Energies of the Ground State of the Hydrogen Molecule , Journal of Chemical Physics, 124 (9) , 2006, p. 7.
Note: 09410
Links:  pdf, postscript and html.
(bullet) J. Hagedorn, J. Terrill, J. Kelso and J. Dunkers, Measurement of Tissue Engineering Scaffolding Material delivered at DIVERSE Birds of a Feather session at SIGGRAPH 2006, Boston, MA, August 2, 2006.
(bullet) J. Dunkers, J. Hagedorn, A. Peskin, J. Kelso, J. Terrill and L. Henderson, Interactive, Quantitative Analysis of Scaffold Structure Using Immersive Visualization in Proceedings of the 2006 Summer Bioengineering Conference, Amelia Island Plantation Amelia Island, FL, June 21, 2006.
(bullet) Z. Levine, A. Kearsley and J. Hagedorn, Bayesian Tomography for Projections with an Arbitrary Transmission Function with an Application to Electron Tomography, Journal of Research of NIST, 111 (6) , November-December, 2006, pp. 411-417.
(bullet) Edward J. Garboczi, Jack F. Douglas and Robert B. Bohn, A hybrid finite element-analytical method for determining the intrisic elastic moduli of particles having moderately extended shapes and a wide range of elastic properties, Mechanics of Materials, 38, 2006, pp. 786-800.
(bullet) S.T. Erdogan, P.N. Quiroga, D.W. Fowler, H.A. Saleh, R.A. Livingston, E.J. Garboczi, P.M. Ketcham, J. G. Hagedorn and S.G. Satterfield, Three-dimensional shape analysis of coarse aggregates: New techniques for and preliminary results on several different coarse aggregates and reference rocks, Cement and Concrete Research, 36, 2006, pp. 1619-1627.

2005

(bullet) Judith E. Devaney, Steven G. Satterfield, John G. Hagedorn, John T. Kelso, Adele P. Peskin, William L. George, Terence J. Griffin, Howard K. Hung and Ron D. Kriz, Science at the Speed of Thought, Ambient Intelligence for Scientific Discovery: Lecture Notes in Artificial Intelligence , 3345, (2005), pp. 1-24.
Note: 0302-9743
Links:  pdf and postscript.
(bullet) W. George, J. Lancien and J. Terrill, MPMD Program Model for Scientific Computing delivered at Scatter/Gather Session II, Supercomputing 2005, Seattle, WA, November 12-18, 2005.
(bullet) J. Kelso, DIVERSE delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 4, 2005.
(bullet) J. Kelso, DIVERSE delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Minneapolis, MN, October 27, 2005.
(bullet) S. Satterfield, Shell Script VR delivered at ACM SIGGRAPH 2005 Conference, DIVERSE Birds of a Feather (BOF) Session, Los Angeles, CA, August 4, 2005.
(bullet) S. Satterfield, Shell Script VR delivered at IEEE Visualization Conference: DIVERSE Birds of a Feather session, Seattle, WA, November 12-18, 2005.
(bullet) J. Sims, G. Bryant and H. Hung, Instrinsic Surface States in Semiconductor nanocrystals: HgS Quantum Dots delivered at American Physical Society, Los Angeles, CA, March 21-25, 2005.
(bullet) H. S. Bennett, H. Hung and A. Heckert, Dependence of Electron Density on Fermi Energy in Compensated n-Type Gallium Antimonide, Journal of Applied Physics, 98 (10) , November 15, 2005, p. 103705.
(bullet) C.-J. Haecker, E. J. Garboczi, J. W. Bullard, R. B. Bohn, Z. Sun, S. P. Shah and T. Voight, Modeling the linear elastic properties of Portland cement paste, Cement and Concrete Research, 35, 2005, pp. 1948-1960.

2004

(bullet) James S. Sims and Nicos S. Martys, Simulation of Sheared Suspensions with a Parallel Implementation of QDPD, Journal of Research of the National Institute of Standards and Technology, 109 (2) , pp. 267-277.
Links:  pdf and postscript.
(bullet) Judith E. Devaney, Steven G. Satterfield and John G. Hagedorn, Science at the Speed of Thought in Workshop on Ambient Intelligence for Scientific Discovery, Vienna, Austria, April 25, 2004.
Note: Held in conjuntion with CHI 2004, The Conference on Human Factors in Computing Systems
Links:  pdf and postscript.
(bullet) James S. Sims and Stanley A. Hagstrom, Math and computational science issues in high-precision Hy-CI calculations I. Three-electron integrals, Journal of Physics B: Atomic, Molecular, and Optical Physics, 37 (7) , 2004, pp. 1519-1540.
Links:  pdf and postscript.
(bullet) William L. George, John G. Hagedorn and Judith E. Devaney, Parallel Programming with Interoperable MPI, Dr. Dobbs Journal, February 1, 2004, pp. 49-53.
Note: Also available as NISTIR 7066, December 2003.
Links:  pdf, pdf and postscript.

2003

(bullet) Christian T. Brown, Harry W. Bullen, Sean P. Kelly, Robert K. Xiao, Steven G. Satterfield, John G. Hagedorn, Judith E. Devaney and , Visualization and Data Mining in a 3D Immersive Environment, , May-June, 2003.
(bullet) Herbert S. Bennett and Howard K. Hung, Dependence of Electron Density on Fermi Energy in N-Type Gallium Antimonide , NIST Journal of Research, 108 (3) , May-June, 2003, pp. 193-197.
(bullet) James S. Sims and Stanley A. Hagstrom, Analytic Value of the Atomic Three-electron Integral with Slater Wave Functions, Physical Review A, 68, 2003. ID: 016501.
Note: Comment: Phys. Rev. A 44,5492(1991)
Links:  pdf and postscript.
(bullet) John Kelso, Steven G. Satterfield, Lance E. Arsenault, Peter M. Ketcham and Ronald D. Kriz, DIVERSE: A Framework for Building Extensible and Reconfigurable Device Independent Virtual Environments and Distributed Asynchronous Simulations , Presence: Teleoperators and Virtual Environments, 12 (1) , February 2003.
(bullet) Howland Fowler, Judith Devaney and John Hagedorn, Growth Model for Filamentary Streamers in an Ambient Field, IEEE Transactions on Dielectrics and Electrical Insulation, 10 (1) , February 2003.
Links:  pdf and postscript.
(bullet) Peter M. Ketcham and David L. Feder, Visualizing Bose-Einstein Condensates , Computing in Science and Engineering, 5 (1) , January-February, 2003, pp. 86-89.
Links:  pdf and postscript.
(bullet) Y. Son, Nicos S. Martys, John G. Hagedorn and K. Migler, Suppression of Capillary Instability of a Polymeric Thread via Parallel Plate Confinement , Macromolecules, 36, 2003, pp. 5825-5833.
(bullet) R.B. Bohn and E.J. Garboczi, User Manual for Finite Element and Finite Difference Programs: A Parallel Version of NISTIR-6269, June 2003. Available as NISTIR 6997.

2002

(bullet) Nicos S. Martys and John G. Hagedorn, Multiscale modeling of fluid transport in heterogeous materials using descrete Boltzmann methods , Materials and Structures, 35, December 2002, pp. 650-659.
Links:  pdf and postscript.
(bullet) Harry W. Bullen IV, Jessica S. Chang, Alexander V. Harn, Sean P. Kelly, Steven G. Satterfield, Peter M. Ketcham and Judith E. Devaney, A Glyph Toolbox for Immersive Scientific Visualization , October 30, 2002. Available as NISTIR 6924.
Links:  pdf and postscript.
(bullet) William L. George and Jacob Scott, Screen Saver Science: Realizing Distributed Parallel Computing with Jini and JavaSpaces in 2002 Conference on Parallel Architectures and Compilation Techniques (PACT2002), Charlottesville, VA, September 22-25, 2002.
Links:  pdf and postscript.
(bullet) Judith E. Devaney and John G. Hagedorn, Discovery in Hydrating Plaster Using Multiple Machine Learning Methods , Lecture Notes in Computer Science, LNCS 2534, pp. 47-58.
Note: Fifth International Conference on Discovery Science, DS 2002, Lubeck, Germany, November 24-26, 2002
Links:  pdf and postscript.
(bullet) James S. Sims, William L. George, Steven G. Satterfield, Howard K. Hung, John G. Hagedorn, Peter M. Ketcham, Terence J. Griffin, Stanley A. Hagstrom, Julien C. Franiatte, Garnett W. Bryant, W. Jaskolski, Nicos S. Martys, Charles E. Bouldin, Vernon Simmons, Olivier P. Nicolas, James A. Warren, Barbara A. am Ende, John E. Koontz, B. James Filla, Vital G. Pourprix, Stefanie R. Copley, Robert B. Bohn, Adele P. Peskin, Yolanda M. Parker and Judith E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization II, NIST Journal of Research, 107 (3) , May-June, 2002, pp. 223-245.
Links:  pdf and postscript.
(bullet) Ronald D. Kriz, John Kelso and A. Ray, Visual Interpretation and Analysis of HPC Nanostructure Models using Shared Virtual Environments, Modeling and Simulation, 1 (4) , 2002, pp. 9-10.
(bullet) John Kelso, Lance E. Arsenault, Steven G. Satterfield and Ronald D. Kriz, DIVERSE: A Framework for Building Extensible and Reconfigurable Device Independent Virtual Environments in Proceedings of the Virtual Reality 2002 Conference, Orlando, FL, March 24-27, 2002.
Links:  pdf and postscript.
(bullet) D.P. Bentz, S. Mizell, S. G. Satterfield, J. E. Devaney, W. L. George, P. M. Ketcham, J. Graham, J. Porterfield, D. Quenard, F. Vallee, H. Sallee, E. Boller and J. Baruchel, The Visible Cement Dataset, NIST Journal of Research, 107 (2) , March-April, 2002, pp. 137-148.
Links:  pdf and postscript.
(bullet) James S. Sims and Stanley A. Hagstrom, High Precision Hy-CI Variational Calculations for the Ground State of Neutral Helium and Heliumlike Ions, International Journal of Quantum Chemistry, 90 (6) , 2002, pp. 1600-1609.
Note: DOI 10.1002/qua.10344
Links:  pdf, postscript and html.
(bullet) Alex L. Ankudinov, Charles E. Bouldin, John J. Rehr, James S. Sims and Howard K. Hung, Parallel Calculation of Electron Multiple Scattering Using Lanczos Algorithms, Physical Review B, 65 (10) , 2002.
Links:  pdf and postscript.
(bullet) William L. George and James A. Warren, A Parallel 3D Dendritic Growth Simulator Using the Phase-field Method, Journal of Computational Physics, 177, 2002, pp. 264-283.
Links:  pdf and postscript.
(bullet) Garnett W. Bryant, J. Aizpurua, Rui-Hui Xie, Julien C. Franiatte, Judith E. Devaney, W. Jaskolski, M. Zielinski, S. Lee, J. Kim, L. Jonsson and J. W. Wilkins, Designing the Nanoworld: Atomic Scale Simulations of Nanostructures and Nanodevices delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 20, 2002.
(bullet) Julien C. Franiatte, Judith E. Devaney, Garnett W. Bryant, Steven G. Satterfield and William L. George, Building Nanostructures Interactively in an Immersive Visualization Environment delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 20, 2002.
(bullet) Julien C. Franiatte, Steven G. Satterfield, Garnett W. Bryant and Judith E. Devaney, Parallelization and Visualization of Computational Nanotechnology LCAO Method delivered at Nanotechnology at the Interface of Information Technology, New Orleans, LA, February 7-9, 2002.
Links:  pdf and pdf.
(bullet) Judith Devaney and John Hagedorn, The Role of Genetic Programming in Describing the Microscopic Structure of Hydrating Plaster in Late Breaking Papers in Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO 2002), San Francisco, July 8-13, 2002.
Links:  pdf and postscript.

2001

(bullet) Martial Michel, Contribution au Transfert de Donnees: Application a MPI, October 2001, Ph.D. dissertation, Universite Henri Poincare.
(bullet) Charles E. Bouldin, James S. Sims, Howard K. Hung, John J. Rehr and Alex L. Ankudinov, Rapid Calculation of X-ray Absorption Near Edge Structure Using Parallel Computing, Journal of X-ray Spectroscopy, 30, 2001, pp. 431-434.
(bullet) John Hagedorn and Judith Devaney, A Genetic Programming System with a Procedural Representation in Late Breaking Papers in Genetic Programming, Genetic and Evolutionary Computation Conference (GECCO 2001), San Francisco, July 7-11, 2001.
Links:  postscript, pdf and html.
(bullet) Judith Devaney, John Hagedorn, Olivier Nicolas, Gagan Garg, Aurelien Samson and Martial Michel, A Genetic Programming Ecosystem in The 15th Annual International Parallel and Distributed Processing Symposium, IPDPS 2001, Workshop on Biologically Inspired Solutions to Parallel Processing Problems, San Francisco, April 23, 2001.
Links:  postscript and pdf.
(bullet) Peter M. Ketcham, David L. Feder, Charles W. Clark, Steven G. Satterfield, Terence J. Griffin, William L. George, Barry I. Schneider and William P. Reinhardt, Volume Visualization of Bose-Einstein Condensates, April 30, 2001. Available as NISTIR 6739.
Links:  postscript and pdf.
(bullet) James S. Sims, John G. Hagedorn, Peter M. Ketcham, Steven G. Satterfield, Terence J. Griffin, William L. George, Howland A. Fowler, Barbara A. am Ende, Howard K. Hung, Robert B. Bohn, John E. Koontz, Nicos S. Martys, Charles E. Bouldin, James A. Warren, David L. Feder, Charles W. Clark, B. James Filla and Judith E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization , July 26, 2001. Available as NISTIR 6709.
Links:  postscript and pdf.

2000

(bullet) James S. Sims, John G. Hagedorn, Peter M. Ketcham, Steven G. Satterfield, Terence J. Griffin, William L. George, Howland A. Fowler, Barbara A. am Ende, Howard K. Hung, Robert B. Bohn, John E. Koontz, Nicos S. Martys, Charles E. Bouldin, James A. Warren, David L. Feder, Charles W. Clark, B. James Filla and Judith E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization , NIST Journal of Research, 105 (6) , November-December, 2000, pp. 875-894.
Links:  postscript and pdf.
(bullet) Peter Ketcham and David Feder, Bose-Einstein Condensate, , p. ???, illustration in SIGGRAPH 2000 Conference Proceedings, 2000.
(bullet) Peter Ketcham and David Feder, Bose-Einstein Condensate, , p. 68, illustration in Graham P. Collins, The coolest gas in the Universe, Scientific American, 283 (6) , December 2000.
(bullet) Peter Ketcham and David Feder, Bose-Einstein Condensate, cover of Optics & Photonics News: Optics in 2000, 11 (12) , December 2000.
(bullet) Judith Devaney, John Hagedorn, Steve Satterfield, Barbara am Ende and Howard Hung, Tool Integration, Development, and Visualization for High Throughput Experiment Environments delivered at Workshop on Combinatorial Methods for Materials: Systems Integration in High Throughput Experimentation, Los Angeles, CA, November 15, 2000.
(bullet) Nicos Martys and James Sims, Application of Dissipative Particle Dynamics for Modeling Cement Based Materials delivered at Symposium on Materials Science of High Performance Concrete, November 28-30, 2000.
(bullet) Eric Landis, Shan Lu, Nicos Martys and John Hagedorn, Experiments and Simulations of Concrete Microstructure Permeability delivered at Symposium on Materials Science of High Performance Concrete, November 28-30, 2000.
(bullet) Judith E. Devaney, The role of Choice in Discovery, Lecture Notes in Artificial Intelligence, LNAI 1967, December 2000, pp. 247-251.
Note: Third International Conference on Discovery Science, DS 2000, Kyoto, Japan, December 4-6, 2000
(bullet) Nick Martys and Jim Sims, Modeling the Rheological Properties of Concrete in The Virtual Cement and Concrete Testing Laboratory Documentation System, Building and Fire Research Laboratory, NIST.
(bullet) Peter Ketcham and David Feder, Bose-Einstein Condensate, cover of Parity, August 2000.
(bullet) Judith Devaney, Delphine Goujon, Howard Hung, John Koontz, Robert Lipman, Ryan McCormack, Martial Michel and Katherine Pagoaga (the PADE development environment and associated tools), Acknowledged in: David H. M. Spector, Building Linux Clusters with CDROM, O'Reilly Associates, July 2000.
Note: ISBN: B0000667GB
(bullet) Charles Clark, D.Feder, B.Schneider and Peter Ketcham, Dynamics of Vortex Formation in Rotating Bose-Einstein Condensates delivered at Workshop on Rotating Bose-Einstein Condensates, European Centre for Theoretical Studies in Nuclear Physics, Trento, Italy, June 11, 2000.
(bullet) John Hagedorn and Judith Devaney, Parallel Genetic Programming delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May 31-June 1, 2000.
(bullet) Steven Buntin, Steven Robey, Stephan Stranick, Peter Schenck, Debra Kaiser, Judith Devaney, Barbara Anne am Ende and Howard Hung, Scanning Evanescent Probe Microscopy for High Throughput Materials Analysis delivered at Workshop on Combinatorial Methods, National Institute of Standards and Technology, May 31-June 1, 2000.
(bullet) Peter Ketcham, Volume Visualizations of Bose Einstein Condensates delivered at Conference on Visualization Development Environments, Princeton, NJ, April 27-28, 2000.
(bullet) W.C. Liu, S.N. Houde-Walter (Univ. of Rochester Institute of Optics), D.L. Veasey and A.P. Peskin, Design and optimization of a diode-pumped, glass waveguide laser, Applied Optics, 39 (33) , pp. 6165-6173.
(bullet) E.D. Marquardt, Ray Radebaugh and A.P. Peskin, Vapor Precooling in a Pulse Tube Liquefier in Cryocoolers 11, Proceedings of the 11th International Cryocooler Conference, Keystone, CO, June 20-22, 2000.
Status: in publication.
Links:  postscript and pdf.
(bullet) E.W.Lemmon, D.G.Friend, A.H.Harvey, M.L.Huber, M.O.McLinden and A.P.Peskin, Thermophysical Property Databases from NIST delivered at 14th Symposium on Thermophysical Properties, Boulder, CO, June 25-30, 2000.
(bullet) Steven Satterfield, James Warren and William George, A simulated dendrite of copper-nickel alloy as it is growing, cover of Journal of Research of the National Institute of Standards and technology, 15 (3) , May-June, 2000.
(bullet) William George, Parallel Programming in MPI: From Local Clusters to Global Grids, April 13, 2000, in Computational Sciences Seminar Series, talk presented at George Mason University.
Status: invited.
(bullet) Hoda El-Sayed, Marc Salit, J.C.Travis, Judith Devaney and William George, Parallel Maximum-Likelihood Inversion for Estimating Wavenumber-Ordered Spectra in Emission Spectroscopy in Proceedings of the International Parallel and Distributed Processing Symposium 2000 (IPDPS 2000), Cancun, Mexico, May 1-5, 2000.
Links:  postscript and pdf.
(bullet) Nicos Martys, John Hagedorn and Judith Devaney, Lattice Boltzmann Simulations of Single and Multi-Component Flow in Porous Media in Mesoscopic Modeling: Techniques and Applications, Nicolaides and Bick (Ed.) , Marcel Dekker, Inc., (to be published).
Links:  postscript and pdf.
(bullet) Jeffrey Squyres, Andrew Lumsdaine, William George, John Hagedorn and Judith Devaney, The Interoperable Message Passing Interface (IMPI) Extensions to LAM/IMPI delivered at Message Passing Interface and High Performance Clusters Developer's and User's Conference, Ithaca, NY, March 20-23, 2000.
Links:  postscript and pdf.
(bullet) William L. George, John G. Hagedorn and Judith E. Devaney, IMPI: Making MPI Interoperable, Journal of Research of the National Institute of Standards and Technology, May-June, 2000.
Links:  postscript and pdf.
(bullet) IMPI Steering Committee, IMPI: Interoperable Message-Passing Interface, January 2000
(bullet) Martial Michel and Judith Devaney, A Generalized Approach for Transferring Data-Types with Arbitrary Communication Libraries in Proceedings of the Workshop on Multimedia Network Systems (MMNS 2000) at the 7th International Conference on Parallel and Distributed Systems, Iwate, Japan, July 4-7, 2000.
Links:  postscript and pdf.
(bullet) Nicos S. Martys and James S. Sims, Modeling the Rheological Properties of Concrete delivered at Virtual Cement and Concrete Testing Laboratory Meeting, Gaithersburg, MD, June 8, 2000.
(bullet) Olivier Nicolas, AutoMap/AutoLink Users Manual, May 15, 2000. Available as NISTIR .
Links:  postscript and pdf.

1999

(bullet) Peter Ketcham and David Feder, Bose-Einstein Condensate, cover of Physics Laboratory, Physics Laboratory Technical Activities, 1999. Available as NISTIR 6438.
(bullet) Peter Ketcham and David Feder, An image of Vortices in a Rotating Bose Einstein Condensate, cover of Physics Today, December 1999.
(bullet) N. Martys, J. Hagedorn, D. Goujon and J. Devaney, Large Scale Simulations of Single and Multi-Component Flow in Porous Media in Proceedings of SPIE: The International Symposium on Optical Science, Engineering, and Instrumentation, Denver, Colorado, July 19-23, 1999, 3772.
Links:  postscript and pdf.
(bullet) Ryan McCormack, John Koontz and Judith Devaney, Secure Web-based Access to High Performance Computing Resources, January 1999, ITL Bulletin, Information Technology Laboratory, National Institute of Standards and Technology.
Links:  postscript, pdf and html.
(bullet) Ryan McCormack, John Koontz and Judith Devaney, An Authentication Framework for Web Access to Remote Hosts, January 1999. Available as NISTIR 6278.
Links:  postscript and pdf.
(bullet) T. Vorburger, E. Marx, M. McKnight, M. Galler, M. VanLandingham, M. Nadal, P. Barnes, A. Thompson, F. Hunt and P. Ketcham, Measurements and Predictions of Light Scattering by Coatings delivered at American Society for Testing and Materials, Committee E-12, Annual Meeting, Ft. Lauderdale, FL, January 26-28, 1999.
(bullet) David Feder, Barry Schneider, Bill Reinhardt, William George, Peter Ketcham, Terence Griffin and Charles Clark, Generation of Solitons and Vortices in BECs by Trap Rotation and Optical Imprinting delivered at Workshop on Bose-Einstein Condensation and Degenerate Fermi Gases, February 10-12, 1999.
(bullet) Peter Ketcham, David Feder, William Reinhardt, Charles Clark and William George, Visualization of the Bose-Einstein Condensate, March 1999. Available as NISTIR 6355.
Links:  postscript and pdf.
(bullet) Judith Devaney, Parallel Computing and the Structure of Science, February 25, 1999, in Computational Sciences Seminar Series, talk presented at George Mason University.
(bullet) Martial Michel, Andre Schaff and Judith Devaney, Managing data-types: the CORBA approach and AutoLink, an MPI solution delivered at Message Passing Interface Developer's and User's Conference (MPIDC'99), Atlanta, GA, March 10-12, 1999.
Links:  postscript and pdf.
(bullet) William George, Dynamic Load Balancing for Data-Parallel MPI Programs delivered at Message Passing Interface Developer's and User's Conference, Atlanta, GA, March 10-12, 1999.
Links:  postscript and pdf.
(bullet) E. L. Shirley, L. X. Benedict and R. B. Bohn, Theory of Optical Absorption with Electron-Hole Attraction in Proceedings of the Seventh International Symposium on Physics and Chemistry of Luminescent Materials, C. W. Struck, K.C. Mishra and B. Di Bartolo (Ed.) , 1999, 98 (24) , pp. 36-48.
(bullet) E. L. Shirley, L. X. Benedict and R. B. Bohn, Theory of Optical Absorption with Electron-Hole Attraction in Proceedings of the Seventh International Symposium on Physics and Chemistry of Luminescent Materials, C. W. Struck, K.C. Mishra and B. Di Bartolo (Ed.) , 1999, 98 (24) , pp. 36-48.
(bullet) A.J. Slifka, B.J. Filla and J.K.Stalick, Thermal Conductivity of Two Compositions of Yttria Stabilized Zirconia delivered at 25th International Thermal Conductivity Conference and 13th International Thermal Expansion Symposium, Ann Arbor, MI, June 13-16, 1999.
(bullet) Ryan McCormack, John Koontz and Judith Devaney, Seamless Computing with WebSubmit, Journal of Concurrency, Practice, and Experience: Special issue on Aspects of Seamless computing, 11 (12) , 1999, pp. 1-15.
Links:  postscript and pdf.
(bullet) William George, John Hagedorn and Judith Devaney, A Java-Based Tool for Testing the Interoperable MPI Protocol in The First International Conference and Exhibition on the Practical Application of Java, London, UK, April 21-23, 1999.
Links:  html, postscript and pdf.
(bullet) P.M.Peters, D.S.Funk, A.P.Peskin, D.L. Veasey, N.A.Sanford, S.N.Houde-Walter and J.S.Hayden, Ion-Exchanged waveguide lasers in Er3+/Yb3+ co-doped silicate glass, Applied Optics 20, 38 (33) , pp. 6879-6886.
(bullet) David L. Veasey, David S. Funk, Philip M. Peters, Norman A. Sanford, Gregory E. Obarski, Norman Fontaine, Matt Young, Adele P. Peskin, Wei-chih Liu, S.N.Houde-Walter and Joseph S. Hayden, Yb/Er-codoped and Yb-doped Waveguide Lasers in Phosphate Glass, Journal of Non-Crystalline Solids, 263, pp. 369-381.
(bullet) Rui Luo, Laurent David, Howard Hung, John Moult, Judith Devaney and Michael Gilson, The Strength of Solvent-Exposed Salt Bridges, Journal of Physical Chemistry B, 103, 1999, pp. 727-736.
(bullet) Martial Michel and Judith Devaney, Fine Packet Size Tuning with AutoLink in Proceedings of the International Workshop on Parallel Computing (IWPP '99), Aizu, Japan, September 21-24, 1999.
Links:  postscript and pdf.
(bullet) John Koontz and Judith Devaney, WebSubmit delivered at Symposium on Multidisciplinary Applications and Interoperability (MAPINT), Fairborn, OH, August 17-18, 1999.
Status: invited.
(bullet) John Hagedorn, Nicos Martys, Delphine Goujon and Judith Devaney, A Parallel Lattice Boltzmann Algorithm for Fluid Flow in Complex Geometries delivered at Symposium on Computational Advances in Modeling Heterogeneous Materials, Fifth National Congress on Computational Mechanics, August 4-6, 1999.
Links:  postscript and pdf.
(bullet) Howland Fowler, Judith Devaney and John Hagedorn, Shaping of Filamentary Streamers by the Ambient Field delivered at 1999 Conference on Electrical Insulation and Dielectric Phenomena, Austin, TX, October 17-21, 1999.
Links:  postscript and pdf.

1998

(bullet) H.A. Fowler, J.E. Devaney, J.G. Hagedorn and F.E. Sullivan (IDA), Dielectric Breakdown in a Simplified Parallel Model in Computers in Physics, 12 (5) , American Institute of Physics, 1998, pp. 478-487.
(bullet) Stephen Nash and Ariela Sofer, On the Complexity of a Practical Interior-Point Method, SIAM Journal of Optimization, (3) , August 1998, pp. 833-849.
(bullet) Steven Nash, Nonlinear Programming, OR/MS Today, 25 (3) , June 1998.
(bullet) Howland A. Fowler, Judith E. Devaney and John G. Hagedorn, User Guide to CADMUS, a Simplified Parallel Code for Laplacian Fractal Growth, June 1998. Available as NISTIR 6180.
Links:  postscript and pdf.
(bullet) Howland A. Fowler, Judith E. Devaney, John G. Hagedorn and Francis Sullivan, Dielectric Breakdown in a Simplified Parallel Model, June 1998. Available as NISTIR 6174.
(bullet) Ryan McCormack, John Koontz and Judith Devaney, WebSubmit: Web Based Applications with Tcl, June 1998. Available as NISTIR 6165.
Links:  postscript and pdf.
(bullet) Andrew Roosen, Ryan McCormack and W. Craig Carter, Wulffman: A Tool for the Calculation and Display of Crystal Shapes, Computational Materials Science, 11 (1) , March 1998, pp. 16-26.
(bullet) Lorin Benedict, Eric Shirley and Robert Bohn, Optical Absorption of Insulators and the Electron-Hole Interaction: An Ab Initio Calculation, Physical Review Letters, 80 (20) , May 18, 1998, pp. 4514-4517.
(bullet) Lorin Benedict, Eric Shirley and Robert Bohn, Theory of Optical Absorption in Diamond, Si, Ge, and GaAs, Physical Review B (Condensed Matter and Materials Physics), 57 (16) , April 15, 1998, p. R9385.
(bullet) Delphine Goujon, Martial Michel, Jasper Peeters and Judith Devaney, AutoMap and AutoLink: Tools for Communicating Complex and Dynamic Data-structures Using MPI in Lecture Notes in Computer Science, 1362, Springer-Verlag, 1998, pp. 98-109.
Links:  postscript and pdf.
(bullet) Delphine Goujon, Martial Michel, Jasper Peeters and Judith Devaney, AutoMap and AutoLink: Review of Tools for Communicating Complex and Dynamic Data-Structures Using MPI, Reseau ESIAL, 4, January 1998, p. 2.
(bullet) Ryan McCormack, John Koontz and Judith Devaney, WebSubmit: Access to Remote computers via the Web delivered at Meeting on Desktop Access to Remote Systems, Argonne National Laboratory, October 8-9, 1998.
Status: invited.
(bullet) Delphine Goujon, Martial Michel, Jasper Peeters and Judith Devaney, AutoMap and AutoLink: Tools for Communicating Complex and Dynamic Data-structures Using MPI delivered at Workshop on Communication, Architecture, and Applications for Network based Parallel Computing (CANPC'98), held in conjunction with the Fourth International Symposium on High Performance Computer Architecture, Las Vegas, NV, January 31-February 4, 1998.
Links:  postscript and pdf.
(bullet) L. X. Benedict, E. L. Shirley and R. B. Bohn, Iterative Computation of Optical Absorption Including the Electron-Hole Interaction delivered at Tenth Annual Workshop on Recent Developments in Electronic Structure Algorithms, U. Penn., Philadelphia, PA, May 1998.
(bullet) E. L. Shirley, L. X. Benedict and R. B. Bohn, Ab initio calculation of absorption spectra with excitonic effects delivered at Spectroscopy of Electronic Excitations in Materials, U. Valladolid, Valladolid, Spain, September 1998.
(bullet) William George, An overview of the paper: 'Parallel Implementations of the Split-Step Fourier Method for Solving Nonlinear Schrodinger Systems', by S.M. Zoldi, V. Ruban, A. Zenchuk, S. Burtsev, December 10, 1998, talk presented to Charles Clark's physics group, NIST.
(bullet) John Hagedorn, Judith Devaney (listed as Active Participants) and NIST (listed as a Supporting Institution), Acknowledged in: The Message Passing Interface Forum (author), MPI2: A Message-Passing Interface Standard, The International Journal of Supercomputer Applications and High Performance Computing, Special issue on MPI, 12 (1-2) , 1998.
Note: John Hagedorn, Judith Devaney, and NIST are members of the Message Passing Interface Forum by virtue of their participation in it.

1997

(bullet) J. Devaney, Equation Discovery Through Global Self Referential Geometric Invariants and Machine Learning, December 1997, Ph.D. dissertation, George Mason University.
(bullet) J. Koontz, R. McCormack, J. Devaney and R. Lipman, WebSubmit: A Paradigm for Platform Independent Computing delivered at Workshop on Seamless Computing, ECMWF, Reading, England, September 1997.
Status: invited.
(bullet) N. Martys and J. Hagedorn, Numerical Simulation of Fluid Transport in Complex Geometries delivered at International Conference on Computational Physics, American Physical Society, 1997.
(bullet) Judith Devaney, Martial Michel, Jasper Peeters and Eric Baland, AutoMap : A Data Structures Compiler for the Automatic Generation of MPI Data Structures Directly From C Code, April 27, 1997. Available as NISTIR .
Links:  postscript and pdf.

1996

(bullet) R. Lipman and J. E. Devaney, WebSubmit: Running Supercomputer Applications Via the WEB, poster presented at Supercomputing 96, Pittsburgh, PA, November 17-22, 1996.
(bullet) K. H. J. Vrielink, E. C. Baland and J. E. Devaney, AutoLink: An MPI Library for Sending and Receiving Dynamic Data Structures, poster presented at International Conference on Parallel Computing, University of Minnesota Supercomputer Institute, October 3-4, 1996.
(bullet) Judith Devaney, Parallel Universes, Perpendicular Thinking, Insight, and Everything delivered at Naval Research Laboratory Workshop on Parallel Computing, 1996.
Status: invited.

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Date created: 1996, Last updated: 2011-01-12.
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