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Nanostructure Modeling

Nanostructure modeling is the computation of the positions and orbitals of atoms in arbitrary nanostructures.

Accurate atomic-scale quantum theory of nanostructures and nanosystems fabricated from nanostructures enables precision metrology of these nanosystems and provides the predictive, precision modeling tools needed for engineering these systems for applications including advanced semiconductor lasers and detectors, single photon sources and detectors, biosensors, and nanoarchitectures for quantum coherent technologies such as quantum computing. The tight-binding model based upon the Linear Combination of Atomic Orbitals (LCAO) method provides an accurate atomistic theory for nanostructures.

The nanostructure modeling code has been parallelized.

(bullet) Why Parallelize Nanostructure Modeling?

The tight-binding method is ideal for modeling small nanostructures. However, for modeling nanostructures with more than 25,000 atoms, the method is impractical on sequential computers due to long run times. Significant improvements in run time can be achieved through parallelization.

(bullet) How is the Parallelization Realized?

There are two parts to parallelizing this problem: creating the structure; and solving the Hamiltonian equation. The structure is created geometrically. We parallelize this by dividing the structure into layers. Communication is across layers. The starting point is a cubic structure that encompasses the desired nanostructure; the structure shape is created by pruning away the excess. We parallelize solving the Hamiltonian with PARPACK. The parallel implementation can handle arbitrary nanostructure shapes through an input file specification procedure.

(bullet) What is the Performance of the Parallel Code?

We ran the code on the NIST NBS Cluster of 500Mhz Pentium III processors. Each processor has a Gigabyte of memory. For the structure consisting of three concentric spheres with diameters 3, 4, and 5 lattice units, the timing data closely matches the formula: T = 655.7 + 3116.0/N. T is execution time (in seconds), and N is the number of processors. The non-parallelizable computation time is 655.7 seconds; while the parallelizable portion of the computation uses 3116.0 seconds. Thus the portion of the code that was directly parallelizable with PARPACK is almost 83%.


Modeling Quantum Dots: The optics of self-assembled quantum dots, also known as artificial atoms, has been studied using our parallelization. Such systems contain up to a million atoms and can only be studied using the parallel implementation. We show how nanomechanical strain can be used to dynamically reengineer the optics of these quantum dots, giving a tool to manipulate mechanoexciton shape, fine-structure splitting and optical transitions, transfer carriers between dots and interact qubits for quantum processing. Most importantly, nanomechanical strain provides both phase and energy control to modify the inner workings of excitons. These are all capabilities needed to use QDs in nanophotonics, quantum information processing, and in optically active devices, such as optomechanical cavities and semiconductor nanotubes.

NanoVis tool.
NanoVis tool.

Additional images are at: Visualization of Nanostructures

(bullet) Papers/Presentations
(bullet) G. Bryant, M. Zielinski, N. Malkova, J. Sims, W. Jaskolski and J. Aizpurua, Effect of Mechanical Strain on the Optical Properties of Quantum Dots: Controlling Exciton Shape, Orientation, and Phase with a Mechanical Strain, Physical Review Letters, 105 (6) , 2010. ID: 067404.
Note: Pages 067404-1 to 067404-1=4 DOI: 10.1103/PhysRevLett.105.067404
(bullet) G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the optics of quantum dots with mechanical strain in Optics of Excitons in Confined Systems (OECS11), Madrid, Spain, September 7-11, 2009.
(bullet) G. Bryant, N. Malkova, J. Sims, M. Zielinski, W. Jaskolski and J. Aizpurua, Re-engineering the optics of quantum dots with mechanical strain in Electronic Materials Conference, University Park, PA, June 24-26, 2009.
(bullet) G. Bryant, M. Zielinski, W. Jaskolski, J. Aizpurua and J. Sims, Controlling the Optical Properties of Self-Assembled Quantum Dots Using External Strain delivered at Materials Research Society Fall Meeting, Boston, MA, November 26, 2007.
(bullet) J. Sims, G. Bryant and H. Hung, Excitons in Negative Band Gap Nanocrystals delivered at American Physics Society March Meeting, Baltimore, MD, March 14, 2006.
(bullet) J. Sims, G. Bryant and H. Hung, Instrinsic Surface States in Semiconductor nanocrystals: HgS Quantum Dots delivered at American Physical Society, Los Angeles, CA, March 21-25, 2005.
(bullet) James S. Sims, W. L. George , Terrence J. Griffin , John G. Hagedorn, Howard K. Hung, John T. Kelso, Marc Olano, Adele P. Peskin, Steven G. Satterfield, Judith E. Terrill, Garnett W. Bryant and Jose G. Diaz, Accelerating Scientific Discovery Through Computation and Visualization III. Tight-Binding Wave Functions for Quantum Dots, NIST Journal of Research, 113 (3) , May-June, 2008, pp. 131-142.
Links:  pdf and pdf.
(bullet) James S. Sims, William L. George, Steven G. Satterfield, Howard K. Hung, John G. Hagedorn, Peter M. Ketcham, Terence J. Griffin, Stanley A. Hagstrom, Julien C. Franiatte, Garnett W. Bryant, W. Jaskolski, Nicos S. Martys, Charles E. Bouldin, Vernon Simmons, Olivier P. Nicolas, James A. Warren, Barbara A. am Ende, John E. Koontz, B. James Filla, Vital G. Pourprix, Stefanie R. Copley, Robert B. Bohn, Adele P. Peskin, Yolanda M. Parker and Judith E. Devaney, Accelerating Scientific Discovery Through Computation and Visualization II, NIST Journal of Research, 107 (3) , May-June, 2002, pp. 223-245.
Links:  postscript and pdf.
(bullet) Julien C. Franiatte, Steven G. Satterfield, Garnett W. Bryant and Judith E. Devaney, Parallelization and Visualization of Computational Nanotechnology LCAO Method delivered at Nanotechnology at the Interface of Information Technology, New Orleans, LA, February 7-9, 2002.
Links:  pdf and pdf.
(bullet) Garnett W. Bryant, J. Aizpurua, Rui-Hui Xie, Julien C. Franiatte, Judith E. Devaney, W. Jaskolski, M. Zielinski, S. Lee, J. Kim, L. Jonsson and J. W. Wilkins, Designing the Nanoworld: Atomic Scale Simulations of Nanostructures and Nanodevices delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 20, 2002.
(bullet) Julien C. Franiatte, Judith E. Devaney, Garnett W. Bryant, Steven G. Satterfield and William L. George, Building Nanostructures Interactively in an Immersive Visualization Environment delivered at NIST Nanotechnology Open House, Gaithersburg, MD, June 20, 2002.

(bullet) Parallel Algorithms and Implementation: James S. Sims , Howard K. Hung , Julien Franiatte
(bullet) Collaborating Scientist: Garnett Bryant
(bullet) Visualization: John Kelso Howard Hung, Julien Franiatte
(bullet) Group Leader: Judith E. Terrill

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Date created: 2002-02-07, Last updated: 2011-01-12.